Scaffold Ga0211736_10278406

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10278406
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4305
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016374	Metagenome / Metatranscriptome	247	Y
F030663	Metagenome / Metatranscriptome	184	Y
F044299	Metagenome	154	Y
F056408	Metagenome / Metatranscriptome	137	Y
F089835	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_1027840610	F044299	GAGG	MNQISQYLVSIDRPPYVNGRRVGQATPCVSYGEPAWFISFLDGYMHASDPVFTDEDGLNSATSIREYANNLGFEPCTN
Ga0211736_1027840611	F056408	N/A	MDEAEIAVNKRIKQLMGQTLDDKFKETWSTMTPADLEKFVKHFAELLIRDCADTAYRFDGLTLGQGYTIAKHIKKNYEVEE
Ga0211736_1027840613	F089835	AGGA	MRLTPLDERMNADIDALIAKLQAAKTSKTYLQRASLVGKIAEQCQSYEFYWEDRLYSLMD
Ga0211736_102784068	F016374	N/A	MQKGTAMNKEITLTPEGGRFYRAMAFHWVTVVILMPPLAVAMIAAILNPFWFRDSMFNFVERKINEFTRWRNNVKYRIYLGCDPVVWHTLKGDLK
Ga0211736_102784069	F030663	AGGA	MYELIFTFLVVTKAGLPGFHIERISQFRDVTDCEKTRTSMVTYMDQLVREQKMFPGVFECRKVQQ