NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10232445

Scaffold Ga0211736_10232445


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10232445 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2211
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008494Metagenome / Metatranscriptome332N
F010398Metagenome304Y
F040618Metagenome161N
F043399Metagenome156N

Sequences

Protein IDFamilyRBSSequence
Ga0211736_102324452F008494AGGAGMTKKEVINLFMSAVGQYTSAIDKTAESNIQYKKSVYALEDAVNLIYRNVDAKELGSNAEARNAKVSEKTQDLIVAKREAEYLLETARANESRIKAEVDQMKYIIRALEAKEEA
Ga0211736_102324454F010398AGGAGMQVTIEGVMKVNYQLTVDEDVFTEACEECGLNPKDYKKFTNDQWQELNPHLVQVVFDNESDIDDTEIHSQSTIFADTVTIDDPDHMTTVYYNQDRTFDSVEIL
Ga0211736_102324455F043399N/AMYYIDYPIVIWTIMKKNGNYILLDSCGIEVFRRKENRKQEIYQYLEKNGIDYQEEF
Ga0211736_102324456F040618N/AMENTTVRMSMTVQVEDVGGISSCIGFVGQGIWFDGKSFIVTQYKANPAYWYFFVYNDFTPEANYFHELPVDFSIGNEIWHLNPDNGQVPGTVYLFSTMTDTLYIPFSISQPNKETSPTFLFEIN

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