Scaffold Ga0211736_10230138

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10230138
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6864
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (64.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004546	Metagenome / Metatranscriptome	433	Y
F007569	Metagenome / Metatranscriptome	348	Y
F029677	Metagenome / Metatranscriptome	187	Y
F085168	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_102301381	F029677	N/A	MSEKQPNEFGKALQEWWDSDSYKEMMKANEEARQRAIGKYHMLSEEDKIDMVEAITHIMCKAESEGTSHRGLQSALGIYPA
Ga0211736_1023013810	F085168	GGTGG	MIRRFRIFLWQIISDLEQKLYPYVGEDSNDYYYTIKNDQTGESYMIIEWVKSFDERIVKLQEEMMYLKSELQQIKNND
Ga0211736_1023013814	F004546	GAG	MDYNEEFPFDQFPWKLVHTEGKETRKCYFQSEEHRKKHIERYNLKKKDIKLSHKYEV
Ga0211736_1023013815	F007569	GGAGG	MNFTSEQYKLIFTAVRRYQFEKTILDSKEYHACGEILDELFDSVYTQRREQPT