Basic Information | |
---|---|
Taxon OID | 3300020151 Open in IMG/M |
Scaffold ID | Ga0211736_10230138 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | SciLifeLab |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 6864 |
Total Scaffold Genes | 25 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (64.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01 | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Erken, Sweden | |||||||
Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 4 to 10 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004546 | Metagenome / Metatranscriptome | 433 | Y |
F007569 | Metagenome / Metatranscriptome | 348 | Y |
F029677 | Metagenome / Metatranscriptome | 187 | Y |
F085168 | Metagenome | 111 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0211736_102301381 | F029677 | N/A | MSEKQPNEFGKALQEWWDSDSYKEMMKANEEARQRAIGKYHMLSEEDKIDMVEAITHIMCKAESEGTSHRGLQSALGIYPA |
Ga0211736_1023013810 | F085168 | GGTGG | MIRRFRIFLWQIISDLEQKLYPYVGEDSNDYYYTIKNDQTGESYMIIEWVKSFDERIVKLQEEMMYLKSELQQIKNND |
Ga0211736_1023013814 | F004546 | GAG | MDYNEEFPFDQFPWKLVHTEGKETRKCYFQSEEHRKKHIERYNLKKKDIKLSHKYEV |
Ga0211736_1023013815 | F007569 | GGAGG | MNFTSEQYKLIFTAVRRYQFEKTILDSKEYHACGEILDELFDSVYTQRREQPT |
⦗Top⦘ |