NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211736_10230138

Scaffold Ga0211736_10230138


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10230138 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6864
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (64.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004546Metagenome / Metatranscriptome433Y
F007569Metagenome / Metatranscriptome348Y
F029677Metagenome / Metatranscriptome187Y
F085168Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0211736_102301381F029677N/AMSEKQPNEFGKALQEWWDSDSYKEMMKANEEARQRAIGKYHMLSEEDKIDMVEAITHIMCKAESEGTSHRGLQSALGIYPA
Ga0211736_1023013810F085168GGTGGMIRRFRIFLWQIISDLEQKLYPYVGEDSNDYYYTIKNDQTGESYMIIEWVKSFDERIVKLQEEMMYLKSELQQIKNND
Ga0211736_1023013814F004546GAGMDYNEEFPFDQFPWKLVHTEGKETRKCYFQSEEHRKKHIERYNLKKKDIKLSHKYEV
Ga0211736_1023013815F007569GGAGGMNFTSEQYKLIFTAVRRYQFEKTILDSKEYHACGEILDELFDSVYTQRREQPT

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.