Scaffold Ga0211736_10152138

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10152138
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22440
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (35.14%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (38.46%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001259	Metagenome / Metatranscriptome	735	Y
F001272	Metagenome / Metatranscriptome	733	Y
F006135	Metagenome / Metatranscriptome	380	N
F010688	Metagenome / Metatranscriptome	300	Y
F014610	Metagenome / Metatranscriptome	261	N
F016803	Metagenome / Metatranscriptome	244	Y
F018915	Metagenome / Metatranscriptome	232	Y
F023096	Metagenome / Metatranscriptome	211	N
F025727	Metagenome / Metatranscriptome	200	N
F029366	Metagenome / Metatranscriptome	188	N
F033774	Metagenome	176	N
F045750	Metagenome / Metatranscriptome	152	N
F061810	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_1015213812	F033774	N/A	VKETIQRDAFKFAVGRSIFCAIPECGVILDWKRAAEFSACKGDKYVSIKVFCADCADRVRPSIEAKLADLGMRLEVIDGRNL
Ga0211736_1015213816	F029366	GGAGG	VGAKKNLEVNLENGSGVGHGMSEGVKRKTGRPEKSVSSEQKKIALRAAYLGMPEDRVAVLCGFSCGNPAGWGQYLMRHPEFKRELESARVTGEVEMQGRVLDAGNGWQGSAWLLERTRGYVARASLEHTGKGGKELSVSGNLLGAFGGQSK
Ga0211736_101521382	F001259	AGGAGG	MKDSIAFIYVHKTNGVVRVESLDTAKHIDGNPEWKHVSTVNALYILESILRAKGKERNLIIKHLLS
Ga0211736_1015213823	F016803	AGAAGG	MISFIAKLRAAWTFTRHQRWVDPLPWSKPDAITLNNFFKSETGKKFRDALLNTVLMQNASAITDRNHLQYSSGFAMGQASLVKVIEMMADQESITGQEDDPDSATNT
Ga0211736_1015213826	F010688	N/A	MVIAVSPKGHHRAIGGAPSHSACGCEEADNNAPMIAIPVEALSTDTEDGQQASPEVGDEVVLQEVRGVLKKLENGEAYVEIKSVNGMPAEYEEKSMEKEGPMDEEGMRNMVAEYDSEMES
Ga0211736_1015213827	F014610	GGAG	MPIYTFENKGKSVEQIAPMGTDSLVIKGERWTRQPVARFGVTGFAREAELKDKVKQGFSRMEDRQGTRFESTFSKNQIRKIWDI
Ga0211736_1015213829	F061810	N/A	VTLALGTRLASSGSGGNVTPVDPPIMRRDLLQEDEFFVLQEDGTGKIVLSFGTYDRMATEQGTDLILTEASDKFILTVY
Ga0211736_101521383	F006135	N/A	MSTHIKIENQTEVPVLVALFEQPKCNDHPTRSAVLKPGESCDWGSGSVPLGNYQCYAVMSGDASSHDEWVWHFPGIAEVVAPLELGFKLWHEGDIDWLNLKAMSADDLNATFGSAYTSAKSSTKSWNGMSSCIFHIRGGPSWVEETEQVGIWRPKTLAYNGVQSTPMKSE
Ga0211736_1015213832	F001272	N/A	MEITITLTQEQTNSLLQLIDIAIKAGGYQNAKVGVPLADIILAAAQPKSE
Ga0211736_1015213834	F018915	N/A	VNWVYQILKALLDWFRETPPTDVQHGKAPEAIKDDLAGRVADLPGLPGDTGGPGPFR
Ga0211736_101521385	F045750	GAGG	METVMSRIGRMLGMRMHNSNRPVCPVPQSPETVSSSPDTIAIAKAPKRKTRKHLKSTYMKTNDSIDKVNALRIKGLTYKAIGVELNISKQRVFQIIAAGKKRDEASQQWTAGLGSRNTSLMNKLGIKDKATALHAIQVRDIVPFKWPNFGLRSYHDLCAWLETAPIDSGIGRHCPHCGKTSKQ
Ga0211736_101521386	F025727	N/A	MSKHSYPLVESIKVVHLSDGRTIRVRRDRTDENLKTTYGDGDIHLTCVSQAHDPIEMIKTLARLESVRSVELVDSKGNGIVIHKQK
Ga0211736_101521387	F023096	N/A	MKQSSTHDLVNALNIISAQLDTPDGIPNALCAEASQRLLELVQLTSDLTAHIISNPVHHGRCNAKTKGNYCNCILARLITT