NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10141402

Scaffold Ga0211736_10141402


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10141402 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1581
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023107Metagenome / Metatranscriptome211Y
F043392Metagenome / Metatranscriptome156N
F066766Metagenome / Metatranscriptome126N
F073094Metagenome120N
F091353Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0211736_101414021F073094GGAMTTIAAIQGENWAAIGYDSRLTEDNSKIYTLPKDNGKVSKNGSYIIGAAGDMRAINILTHVFKPPAVSPNLYGAKLDKFMSSVFIQEMKRCFEENSYSKDGEHDSQVMVAVNGTIYEIGDDFSWAHDETGVY
Ga0211736_101414022F043392AGTAGGMEIVDKYYHANGSAVPFIAALVDDPADGDTKIVIMFDEKDFTAVLSLDSLLRDEDVSARNNGYHGDKYEKLREDLWDGFLN
Ga0211736_101414023F091353GGAMIKTSIDLFDETCNAIVSGELDRQLIPLKKLLEERLSLTRADADVKDFVVGDRIVLNDKCGTKYLIGEEGTVVAIRRSKISISFDKPKGRFARTNSEGGTYSAHVVVPVSIVDKI
Ga0211736_101414024F023107AGGMDSILPSRTVMFVGDYFTLMTTIVLDEKLRNEDETDNDFAVRVASVFMEEYYGFDVASVANSIGVVDEGGMVEEDD
Ga0211736_101414025F066766N/ALEYTENTLVKLVRDNYGDNAVEYLVGRLSSVITESQLKVLIDYEKGVNG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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