Basic Information | |
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Taxon OID | 3300020151 Open in IMG/M |
Scaffold ID | Ga0211736_10141402 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | SciLifeLab |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1581 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erken, Sweden | |||||||
Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 4 to 10 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F023107 | Metagenome / Metatranscriptome | 211 | Y |
F043392 | Metagenome / Metatranscriptome | 156 | N |
F066766 | Metagenome / Metatranscriptome | 126 | N |
F073094 | Metagenome | 120 | N |
F091353 | Metagenome / Metatranscriptome | 107 | N |
Protein ID | Family | RBS | Sequence |
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Ga0211736_101414021 | F073094 | GGA | MTTIAAIQGENWAAIGYDSRLTEDNSKIYTLPKDNGKVSKNGSYIIGAAGDMRAINILTHVFKPPAVSPNLYGAKLDKFMSSVFIQEMKRCFEENSYSKDGEHDSQVMVAVNGTIYEIGDDFSWAHDETGVY |
Ga0211736_101414022 | F043392 | AGTAGG | MEIVDKYYHANGSAVPFIAALVDDPADGDTKIVIMFDEKDFTAVLSLDSLLRDEDVSARNNGYHGDKYEKLREDLWDGFLN |
Ga0211736_101414023 | F091353 | GGA | MIKTSIDLFDETCNAIVSGELDRQLIPLKKLLEERLSLTRADADVKDFVVGDRIVLNDKCGTKYLIGEEGTVVAIRRSKISISFDKPKGRFARTNSEGGTYSAHVVVPVSIVDKI |
Ga0211736_101414024 | F023107 | AGG | MDSILPSRTVMFVGDYFTLMTTIVLDEKLRNEDETDNDFAVRVASVFMEEYYGFDVASVANSIGVVDEGGMVEEDD |
Ga0211736_101414025 | F066766 | N/A | LEYTENTLVKLVRDNYGDNAVEYLVGRLSSVITESQLKVLIDYEKGVNG |
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