NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211736_10048001

Scaffold Ga0211736_10048001


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10048001 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30143
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (16.36%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014380Metagenome / Metatranscriptome263Y
F015602Metagenome / Metatranscriptome253Y
F093878Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0211736_1004800142F015602N/AMNHFTGKYIKNNGTLEFASLANSKQFERFVSNIPEGMLVECFYEVTHDDATLPQLAKIHVMLKHLASHIGETVENMKILVKDRAGLCIAREVSGKEYFLAKSFGECSKEELSLAIQAAIEIGEEVSCFVG
Ga0211736_100480017F014380N/AMAIVSQVDKRVKMNAWDIVKYQILTHCYLYKIVISEADLNCLTYLAIEGEQELTTFCMKAFEKGIFSSTQSVRNCLTKMEKKTLIAKEGKNKKKIFVNPELKVSSRGNILLDYKFLCVEA
Ga0211736_100480019F093878N/AMSEEQKVPTKEEIMGFLQEQIDVKKLQVELQELNTNLAALKAEELKALSFIGQMTNPQAAAKEEQPQGTPHTVTQEDLDNNPELVEAGVAVGDDVLIPTAPEEEASKRSLKKV

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