Scaffold Ga0211736

Basic Information
Taxon OID	3300020151 Open in IMG/M
Scaffold ID	Ga0211736_10006988 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020151 Open in IMG/M

Scaffold ID

Ga0211736_10006988 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

SciLifeLab

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10471
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (12.50%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

10471

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (12.50%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)	Depth (m)	4 to 10
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erken, Sweden

Coordinates

Lat. (^o)

59.83763399

Long. (^o)

18.6203826

Alt. (m)

Depth (m)

4 to 10

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028802	Metagenome	190	Y
F031491	Metagenome / Metatranscriptome	182	Y
F041189	Metagenome / Metatranscriptome	160	Y
F078724	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_1000698812	F078724	N/A	MIESLYTKYFQKSRSFLFPALGIKRTSNFTPTGVYLSIDECIAPEEVKLICSYKNEDSEGFKKFEAQMLLSNPLFSHIINIEGYNLYVFDFEIYQADWFNFLLGKYSKLSPVLKRAIKSYYGDNSSEYKYIETYLFPERYFDVYAKILDVSATTLKELGELCDPCDLEKETLKIPVVDLEMLKKTV
Ga0211736_1000698813	F028802	N/A	MNKSMILITGTWANGKTFKMIPATPESPYNEAIFDPEAKVLALIGKEKKQSLHMLAKLNDFGDPQTMKIGKRSNGKDYAEERKTIETYYEYYIESPDEIKNIINMLALNADSFDYNQYLEVKPKAAEKPSSIISV
Ga0211736_100069882	F031491	N/A	MTQEEIKELKKNKLETIRDYHQKLIDNLEIPRTDFNMKMAFYDKQGRNVVGIFASEFKKEKGFYFELITRDLEPLDAERTVYKIPSNSAFEEEFELNEKGSYLVPLEELRIVNTTSVAISGASAISDKPSFKPPIAAYKAPGAMEDAPYTEMTIRDYYAIQTGKPVSSKTWLNDLIKSNK
Ga0211736_100069884	F041189	N/A	MFSTTGQEVKQGGGTLKSLQPGVAYAHIHSSQVRTSNKGDKKVLELTLVGEAADGFEGWAIDKDNPDGAKYEGPSSRVSATIWTDQFNSDDINKNDILNKIVVIATELGVRSEIDAISAKSSVTSIEQWVAEATNVLKGHNIYWFLKGTEEEYNGKTITKLSLPKYKFVSKEESKLDKFDKNNQYHFKGLVNKPVNSFEPTTDDFQM

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211736_10006988

Overview

Ecosystem & Geography

Associated Families

Sequences