Scaffold Ga0211732_1564621

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1564621
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2796
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003541	Metagenome / Metatranscriptome	480	Y
F005742	Metagenome / Metatranscriptome	391	Y
F007116	Metagenome / Metatranscriptome	357	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_15646214	F005742	N/A	MKVTGLKNIMKEVNEPNEFELFVDDLAHPYYWIFKVYGVRVKTLAAQVEHLRKPSARFDVFINGLFISENDYMFQNEGSYFYVKFIKSKFPVLDRFGNSYELDETDEIKINGDLEKYI
Ga0211732_15646215	F007116	N/A	MARQIPNINSGNFLIQRERLAFKQFVLKVNTDTFIYTYNPNTLVLDETGRLLTLTLLNKKFIFDLLQIDDVKDYVDVYLFGVKQPQDRYDIDVDSNNIIVTFTSDITRLPNEVKTTDFEIKGKIAEIL
Ga0211732_15646216	F003541	AGCAG	MARLIPRKQIEEQQNISGSFRVGEDINIGNNAIISGSIFVSQSFFFGSVTSSRSEITGSVFLTGSLTIDGILKTAAPNTILSVTASNTLDAVDTQRYAGILAKDFGANLPTLYVSSTDGDDSN