Scaffold Ga0211732_1467530

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1467530
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1294
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F002406	Metagenome	562	Y
F010618	Metagenome	301	N
F093841	Metagenome	106	Y
F098687	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_14675302	F002398	AGGA	MIPALSIFLLTSLDPIKNFVSLNTYISKNANAHCQQYDIDPHIINIVCFNIIEKTKDDFFAYLDTIGIEHTESGSYYFFKQKVSQNDT
Ga0211732_14675303	F093841	GAGG	MKIEKFIYMSGGFYVYKMEDGYAVKDQFGYTLKAAKTVKTCDRYVQQQLQTRRVAERYAIEKINEEHRKIQ
Ga0211732_14675304	F002406	GGA	MSERLRDELSSEYDDETKDLIIRAFRNGLFQNPSLIEELKSSSLIESDYFEDNDED
Ga0211732_14675305	F010618	AGGAG	LSLKELILKLQELEKKYEQYSKDTEVVLAVHSKNEYNPEVNLDYIDEVVHPALDTYSGYLCRIVLCGEIEQQD
Ga0211732_14675306	F098687	N/A	HFEFACINGWLILTKEYETFQEAVEDGKWGGMAEWEMVFEESEEVVA