Scaffold Ga0211732_1463895

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1463895
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2153
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F072286	Metagenome	121	N
F093841	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_14638952	F093841	GAG	MKIEKFIYMSGGFYVYKMEDGYAVKDQFGYTLKTAKTVKTCDRYVQQQLETRRAAERYAIERINQEHNKNKSI
Ga0211732_14638954	F002398	AGG	MLPLLHIFLLTSVNPIKNFVSLKTYISENAKVHCQVYFIDESIADYPRVNIIEKSRVDFFSYLDTIGVEHTQVGGYFFFRKKPNNE
Ga0211732_14638956	F072286	N/A	MELENPTTEKTFVYYVTERHGYVETTLAYLRRLKISKLISKFSKHMRGKVYIEEDGDLKLFLKRLEYDNIEVTLKEDYTKPQSFFDNLLCLDDYTWTNEQFDKFSTNWSIDFKCYFSKQDDIKHVRDGIFETKDGKQLKIYPTVYLDGKPLSPAQAKKIGFEPQSIVTNDLEENYD