NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1461415

Scaffold Ga0211732_1461415


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1461415 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4102
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (46.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004314Metagenome / Metatranscriptome444Y
F021760Metagenome / Metatranscriptome217Y
F048268Metagenome / Metatranscriptome148Y
F071779Metagenome / Metatranscriptome122Y
F105024Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0211732_14614151F021760N/AMCGPAFEYTFQDFLNDASTEEWAEWESKAAELELTVDYYVQEFVACAA
Ga0211732_146141514F048268AGGMNLSNTSVSKIADALKPTVINYIYEDESFADYMQTAIVEGIRATMGDMDEDLLFELGMLIFDRIELK
Ga0211732_14614152F105024N/AMMKTKTSWIDELIKWENAHPEYKPFQEDKDSQRQQNTKDKY
Ga0211732_14614153F071779GAGMTQTTYRVIGFGVNEHGFFNQFAFCSSIGYACGFYNAHLQDPEMDGAVIVRVNHEDWEVIQEFNSASYSHSVVYGPVGNLKVERAPQLVLV
Ga0211732_14614155F004314GAGGMYDDYDLDYTYTNDYADLDGDYTYTQDLDEDYARDTHDLEALAYRHYA

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