Basic Information | |
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Taxon OID | 3300020141 Open in IMG/M |
Scaffold ID | Ga0211732_1461415 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | SciLifeLab |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4102 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (46.67%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erken, Sweden | |||||||
Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 10 to 20 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004314 | Metagenome / Metatranscriptome | 444 | Y |
F021760 | Metagenome / Metatranscriptome | 217 | Y |
F048268 | Metagenome / Metatranscriptome | 148 | Y |
F071779 | Metagenome / Metatranscriptome | 122 | Y |
F105024 | Metagenome / Metatranscriptome | 100 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0211732_14614151 | F021760 | N/A | MCGPAFEYTFQDFLNDASTEEWAEWESKAAELELTVDYYVQEFVACAA |
Ga0211732_146141514 | F048268 | AGG | MNLSNTSVSKIADALKPTVINYIYEDESFADYMQTAIVEGIRATMGDMDEDLLFELGMLIFDRIELK |
Ga0211732_14614152 | F105024 | N/A | MMKTKTSWIDELIKWENAHPEYKPFQEDKDSQRQQNTKDKY |
Ga0211732_14614153 | F071779 | GAG | MTQTTYRVIGFGVNEHGFFNQFAFCSSIGYACGFYNAHLQDPEMDGAVIVRVNHEDWEVIQEFNSASYSHSVVYGPVGNLKVERAPQLVLV |
Ga0211732_14614155 | F004314 | GAGG | MYDDYDLDYTYTNDYADLDGDYTYTQDLDEDYARDTHDLEALAYRHYA |
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