Scaffold Ga0211732_1461415

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1461415
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4102
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (46.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004314	Metagenome / Metatranscriptome	444	Y
F021760	Metagenome / Metatranscriptome	217	Y
F048268	Metagenome / Metatranscriptome	148	Y
F071779	Metagenome / Metatranscriptome	122	Y
F105024	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_14614151	F021760	N/A	MCGPAFEYTFQDFLNDASTEEWAEWESKAAELELTVDYYVQEFVACAA
Ga0211732_146141514	F048268	AGG	MNLSNTSVSKIADALKPTVINYIYEDESFADYMQTAIVEGIRATMGDMDEDLLFELGMLIFDRIELK
Ga0211732_14614152	F105024	N/A	MMKTKTSWIDELIKWENAHPEYKPFQEDKDSQRQQNTKDKY
Ga0211732_14614153	F071779	GAG	MTQTTYRVIGFGVNEHGFFNQFAFCSSIGYACGFYNAHLQDPEMDGAVIVRVNHEDWEVIQEFNSASYSHSVVYGPVGNLKVERAPQLVLV
Ga0211732_14614155	F004314	GAGG	MYDDYDLDYTYTNDYADLDGDYTYTQDLDEDYARDTHDLEALAYRHYA