NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1448034

Scaffold Ga0211732_1448034


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1448034 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1155
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000652Metagenome / Metatranscriptome959Y
F005705Metagenome / Metatranscriptome392Y
F056313Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0211732_14480341F000652N/ASMTGFQSKRASALDKFKGQGMKKVIVRTELYQELMVPESWDRYDVYDFLAEHQSFREAFQGVSNEDQTARIIDLGITTETVTEMGEETFDE
Ga0211732_14480343F005705AGGAGMKIVVKIPQKTRAHLVLFCANTPFKQKRVESKIKYKRNPKHKGREQ
Ga0211732_14480345F056313GGAMRIEGLTEHQVELLDTMWAIEEWEDVEAWLATLDRADRMEAQNLQRLVILEAYEELLEQGKYPDANRVIDQFRLTK
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