NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1425945

Scaffold Ga0211732_1425945


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1425945 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10268
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001806Metagenome / Metatranscriptome631Y
F034160Metagenome / Metatranscriptome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0211732_142594510F001806GGAMDAGVRQKRVEALEKIKEHALVRAKEGADSLEVRDFVTEAKKELAYGLPDEEAFKKAVRATQAYKGSKEG
Ga0211732_14259458F034160AGGMKEGAFTAKAKRKGITSAQLQENVLAEPTKYDDKTVKQARLRQTLVGLHNKKKDKE

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