Basic Information | |
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Taxon OID | 3300020141 Open in IMG/M |
Scaffold ID | Ga0211732_1414938 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | SciLifeLab |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7133 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (61.54%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erken, Sweden | |||||||
Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 10 to 20 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F027414 | Metagenome | 194 | Y |
F044485 | Metagenome | 154 | Y |
F097323 | Metagenome | 104 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0211732_141493810 | F027414 | GGA | MSQQNNNKLYSTPQDRVNTVLGDDGNWWDMLRKAELDYRATGGEKANFQFWITEHYGLRIYYDYDGILPNHDIVDEKKYFLFKLKYT |
Ga0211732_14149383 | F097323 | AGGA | MAKITEEFTNDPSLNENDDVLGDISPEDYVFVVSQDGSLKGISLPEVDVSSSTRVEEIFNFFINRDGGYLASRTLH |
Ga0211732_14149385 | F044485 | GAG | MERLDDWPPPAEWEEVVITWDIMLENNRHRPPAIIDWLETAPGGRYHLHGWKAKEGFAFRFEDPVDALYFKLRWF |
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