NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1334212

Scaffold Ga0211732_1334212


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1334212 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19172
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002268Metagenome / Metatranscriptome576Y
F020169Metagenome225Y
F029756Metagenome187Y
F044489Metagenome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0211732_133421213F044489AGGAGGMNADHTLTQLKAFCKTQSGDEQTWINKGTTYHWNRGKDTSTGLVNGVVRKLAGIDASGHQIWVVAGSLKIESTGTILRFTGIPRKVQKTFEPVAQTQVAQTQTQPELETA
Ga0211732_133421224F029756GGAGMNKRKITTRVIFDGVIDNTFTQMRQVYADENGEYVNCTRNRYYIENDSFDIVYTTGRAISVKELFKGMI
Ga0211732_133421227F002268AGGAGMSGTPTSSSPGITGFIEIFEGRLNKMKLHLKEELSKAKHERDKQAIKRIVVDARKLNRTLKEMRNANTKLCPHCGEKL
Ga0211732_133421230F020169AGGAGMSSTVRIPWTIKIDNEGYWNEVCIWAIERFGLPGDRFQTHANVNYMDFVFNSNKDALMMAIMWNGQIVPDEYLTEFI

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