Basic Information | |
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Taxon OID | 3300020141 Open in IMG/M |
Scaffold ID | Ga0211732_1334212 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | SciLifeLab |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 19172 |
Total Scaffold Genes | 33 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (66.67%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erken, Sweden | |||||||
Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 10 to 20 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002268 | Metagenome / Metatranscriptome | 576 | Y |
F020169 | Metagenome | 225 | Y |
F029756 | Metagenome | 187 | Y |
F044489 | Metagenome | 154 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0211732_133421213 | F044489 | AGGAGG | MNADHTLTQLKAFCKTQSGDEQTWINKGTTYHWNRGKDTSTGLVNGVVRKLAGIDASGHQIWVVAGSLKIESTGTILRFTGIPRKVQKTFEPVAQTQVAQTQTQPELETA |
Ga0211732_133421224 | F029756 | GGAG | MNKRKITTRVIFDGVIDNTFTQMRQVYADENGEYVNCTRNRYYIENDSFDIVYTTGRAISVKELFKGMI |
Ga0211732_133421227 | F002268 | AGGAG | MSGTPTSSSPGITGFIEIFEGRLNKMKLHLKEELSKAKHERDKQAIKRIVVDARKLNRTLKEMRNANTKLCPHCGEKL |
Ga0211732_133421230 | F020169 | AGGAG | MSSTVRIPWTIKIDNEGYWNEVCIWAIERFGLPGDRFQTHANVNYMDFVFNSNKDALMMAIMWNGQIVPDEYLTEFI |
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