Scaffold Ga0211732_1284207

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1284207
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4543
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004006	Metagenome / Metatranscriptome	457	Y
F018177	Metagenome / Metatranscriptome	236	Y
F033808	Metagenome / Metatranscriptome	176	Y
F071247	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_128420711	F004006	AGGA	MTDDIEGLVTSISMNQVLVAILEEHGKIIVPTLRFLDANVSSKELVIDYDEEGPSFTFSLREIDAVGSDSN
Ga0211732_12842075	F033808	AGG	MEMFLLSGIAIGFLVGYPLGLFIDKLDKRIKNDRG
Ga0211732_12842076	F071247	GGAGG	MGSNNKIPFNKTIIRDGRIVRIRKDGAIKADLGPYKAKPAKAK
Ga0211732_12842078	F018177	AGGAG	MPNINEFLNQPERIFSPELEKRGGVKPCGKCDKNAEEYFWDAVQMIISWECPDGHKNSYSVG