Scaffold Ga0211732_1257184

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1257184
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3129
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F003393	Metagenome / Metatranscriptome	489	Y
F005348	Metagenome / Metatranscriptome	403	Y
F060846	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_12571841	F005348	N/A	SVMTFKCDECNGAGYIFWGDNLEYDVEKCQCENFALGTLFTTKEND
Ga0211732_125718411	F060846	GGA	MARSKPISVKIATAKVIQALETKLAQVEADYAKQDEKEAKYK
Ga0211732_12571845	F000808	GAGG	MDNEYTYSLTTLYDGELINTLRVSDMLEAVSAWDKCVDYGFAKEYATYNLSDPTGKMYTKTFYTNGEVVIK
Ga0211732_12571848	F003393	GAG	MIDLENDDTIAIMDYYKVDVLTAGQLMVDDNILIGDEVVAIVEIISLPDGYTLEVVNDFGERDIIQVGEYDQFDLMMLQ