NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1244629

Scaffold Ga0211732_1244629


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1244629 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21543
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (89.74%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000368Metagenome / Metatranscriptome1223Y
F018164Metagenome / Metatranscriptome236Y
F036663Metagenome / Metatranscriptome169N
F053803Metagenome140N
F064418Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0211732_124462915F000368AGGAGMNAKFQAVALSWFRAAASAAIALYLTGSTDLKTLGMAALTGFLGPVLKWLDGSSTDFGRGAE
Ga0211732_124462919F036663AGAAGLIGNYLPLVQPEERSPLVTQVRVALNVAGDDRLDAPLQEILKGLQHRYDIPAVGCINIATLDALAVAPPEW
Ga0211732_124462926F053803AGGAMAVDVELTLDEIMDALRFIHLVRENKKQYEVVDKKFDKNNSSYSVNLMGQLGEMACGKGLGLQVDRSISPSGDNGHDLSTSLGKNIQVKTSTLDKLIFNAPELFVSDYAVLVQFFGDKQLPHVDSKFSILGWTTRELFLANHYKHDYGYGTRLVMDANQLQPIEVLINEIPRL
Ga0211732_124462939F064418N/AGKPRPTEIRLVAKLLDPDAENSEDAAALAIEIIEALDNSRLKRESFIVVAKLADWVPLQAWGEFSTRLQAEKFFPHLSAPNEGGKGTIARLEHPDDLLKRIGAQ
Ga0211732_12446296F018164AGAAGMSKIFRGPTYKYRPGREYDLWFVSYPIGKSVVKANGVWKTMVVPQDSDLATYDRVLRGGYDNVITDAEAVELAAAGYGDYVFNV
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