NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1237141

Scaffold Ga0211732_1237141


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1237141 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9057
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (80.95%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036693Metagenome / Metatranscriptome169Y
F039621Metagenome / Metatranscriptome163Y
F044497Metagenome / Metatranscriptome154Y
F073096Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0211732_12371411F039621GGAGMKSSILGMWLGVILVLVVIAPLATIWSLNTLFPILNIPMGFDTWLAALILAGVV
Ga0211732_123714111F073096GGAGMKKLILLSLVLCLNGCSILALWPKPHDPVMFDNIVSTKIAVEKLNCDDKNWTDAETKLQHLKVYSELRKDPQATSIAQLQEAINKAKASDKKLFCESILKINKTRIDVIVDAWKGR
Ga0211732_123714117F044497AGGAMYEWILALALTQEPVRKWPEWECVRWTWTGDVYERRVVCLEWRKRK
Ga0211732_12371414F036693GAGGVYNKPLKPKNLVAKDLRTPKYRMRVVESKVQYIRQPKHRKADHGLGV

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