Scaffold Ga0211732_1236062

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1236062
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2161
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006112	Metagenome / Metatranscriptome	381	Y
F006698	Metagenome / Metatranscriptome	366	Y
F071983	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_12360621	F071983	N/A	KVVAERWRKHKSRAVNENRLWALYIYLKSGGLAMNWTHEIIAVIRGRKEAYAYERELVKLFEPELNDQYR
Ga0211732_12360623	F006112	AGGAG	MKQDYTMYIYKADRRTKTGERLFSTTVWTDRTEAAMRNECNGLYWLYPASKGWRFEYFPTMKTVKNLMSGKDIQIPHDTPRSCDPSSELYWTM
Ga0211732_12360624	F006698	GGA	MTRYYDTLAVYERNGFDVIVDKSYEDLDPKDCFDDACFDLKDMYRDIECGNLEWFMLRVRVMVENIELSSEFLGGCLYKDAHEVLTDGTAEDLIDQALTAAKKDVYRLYKKFQDISWELDAEAA