NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1204223

Scaffold Ga0211732_1204223


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1204223 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5838
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009462Metagenome / Metatranscriptome317Y
F024559Metagenome / Metatranscriptome205Y
F043407Metagenome / Metatranscriptome156Y
F071245Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0211732_120422310F043407GGAMTTISKNAVSNGLVGSTVSVGYGAIPPAPSPLTIGQVYTTNGTAGQFLTSGSNGTSWSHNNIPDNVLVAKGNPASLEVKGKMIINGVDLEERLNTIEKVLSIPERDVKLEKKHPKLKKLYDEYIAALGKYRTFEAIKGDDDGTT
Ga0211732_12042233F071245AGGAVSPSDHEIIIDWTPKNGIDWWNETCATVLEVFGLPGHRFVYTPSEDFMTFTFKNKKDADLCRILLSEKL
Ga0211732_12042236F024559GGAGGMTSALFKLILGATLLIIVIALGPLIGIWSLNTLFPVLVIPYTIETWAAFGLLFGSVTGLSFGSRKK
Ga0211732_12042239F009462AGGAGMELHESVKDTYKEMVIKNDIGFRLTLKKHEVLSPKGLFSIDMVQESLRTDGTVSDSQTYNFFMTKEECQALAYGLTL

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