Scaffold Ga0211732_1204223

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1204223
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5838
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009462	Metagenome / Metatranscriptome	317	Y
F024559	Metagenome / Metatranscriptome	205	Y
F043407	Metagenome / Metatranscriptome	156	Y
F071245	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_120422310	F043407	GGA	MTTISKNAVSNGLVGSTVSVGYGAIPPAPSPLTIGQVYTTNGTAGQFLTSGSNGTSWSHNNIPDNVLVAKGNPASLEVKGKMIINGVDLEERLNTIEKVLSIPERDVKLEKKHPKLKKLYDEYIAALGKYRTFEAIKGDDDGTT
Ga0211732_12042233	F071245	AGGA	VSPSDHEIIIDWTPKNGIDWWNETCATVLEVFGLPGHRFVYTPSEDFMTFTFKNKKDADLCRILLSEKL
Ga0211732_12042236	F024559	GGAGG	MTSALFKLILGATLLIIVIALGPLIGIWSLNTLFPVLVIPYTIETWAAFGLLFGSVTGLSFGSRKK
Ga0211732_12042239	F009462	AGGAG	MELHESVKDTYKEMVIKNDIGFRLTLKKHEVLSPKGLFSIDMVQESLRTDGTVSDSQTYNFFMTKEECQALAYGLTL