Basic Information | |
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Taxon OID | 3300020141 Open in IMG/M |
Scaffold ID | Ga0211732_1204223 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | SciLifeLab |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5838 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (80.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erken, Sweden | |||||||
Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 10 to 20 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F009462 | Metagenome / Metatranscriptome | 317 | Y |
F024559 | Metagenome / Metatranscriptome | 205 | Y |
F043407 | Metagenome / Metatranscriptome | 156 | Y |
F071245 | Metagenome | 122 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0211732_120422310 | F043407 | GGA | MTTISKNAVSNGLVGSTVSVGYGAIPPAPSPLTIGQVYTTNGTAGQFLTSGSNGTSWSHNNIPDNVLVAKGNPASLEVKGKMIINGVDLEERLNTIEKVLSIPERDVKLEKKHPKLKKLYDEYIAALGKYRTFEAIKGDDDGTT |
Ga0211732_12042233 | F071245 | AGGA | VSPSDHEIIIDWTPKNGIDWWNETCATVLEVFGLPGHRFVYTPSEDFMTFTFKNKKDADLCRILLSEKL |
Ga0211732_12042236 | F024559 | GGAGG | MTSALFKLILGATLLIIVIALGPLIGIWSLNTLFPVLVIPYTIETWAAFGLLFGSVTGLSFGSRKK |
Ga0211732_12042239 | F009462 | AGGAG | MELHESVKDTYKEMVIKNDIGFRLTLKKHEVLSPKGLFSIDMVQESLRTDGTVSDSQTYNFFMTKEECQALAYGLTL |
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