Basic Information | |
---|---|
Taxon OID | 3300020141 Open in IMG/M |
Scaffold ID | Ga0211732_1195680 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | SciLifeLab |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 6153 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (73.68%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Erken, Sweden | |||||||
Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 10 to 20 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F024558 | Metagenome / Metatranscriptome | 205 | Y |
F035768 | Metagenome / Metatranscriptome | 171 | Y |
F039639 | Metagenome / Metatranscriptome | 163 | Y |
F061859 | Metagenome / Metatranscriptome | 131 | Y |
F065787 | Metagenome / Metatranscriptome | 127 | Y |
F081346 | Metagenome / Metatranscriptome | 114 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0211732_119568011 | F024558 | AGGA | MNVILYTEDFEPIIPIDLPLWLLERLEQEGAVRVAVNKPRGFKGEKIPVGTVGNEDMPTVRIRYEKMRWHDGTLKTILVTPDEELALTLTPEWLPGQRAPIQLYLQTVRKMHDELIRQIRKNQS |
Ga0211732_119568015 | F065787 | N/A | MRKLEYYEIRETCKLIEYDLKLAGKGKLWVEVYRDDKYEYRALFPDVADWSQVPMTILTHPIHETQTDLS |
Ga0211732_11956803 | F035768 | GGAG | MKITVEDRLLAAYHAQKLRLRDREDEDYRARIEAKAFERIIVDRVQRNLRLGLDKGTNIDLEV |
Ga0211732_11956805 | F081346 | AGGA | MMSSMLQQIKMAKPDPNKPITHINPPTVVPDRVMPHKPGYNDTVVVPETEANPDKPKRTRRKPSK |
Ga0211732_11956806 | F061859 | GGA | MTFEALLIIVGFCLFACYLVFEWQKAAIPPYQEPVAPEPDLSEQWVKATKADTLDNIDNWNAKVGDKIWYKPDSGPLTESQVEQIKETAVIPQAVWPFPQGPKP |
Ga0211732_11956808 | F039639 | GGA | MNIDREFIKWFYEEAYPEQGSTRRQVYSTTQHSQNINIIDYWMREAFKAGAASQGYQVGDLAEQKAFDTQRNYQTERFIG |
⦗Top⦘ |