NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1195680

Scaffold Ga0211732_1195680


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1195680 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6153
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (73.68%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024558Metagenome / Metatranscriptome205Y
F035768Metagenome / Metatranscriptome171Y
F039639Metagenome / Metatranscriptome163Y
F061859Metagenome / Metatranscriptome131Y
F065787Metagenome / Metatranscriptome127Y
F081346Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0211732_119568011F024558AGGAMNVILYTEDFEPIIPIDLPLWLLERLEQEGAVRVAVNKPRGFKGEKIPVGTVGNEDMPTVRIRYEKMRWHDGTLKTILVTPDEELALTLTPEWLPGQRAPIQLYLQTVRKMHDELIRQIRKNQS
Ga0211732_119568015F065787N/AMRKLEYYEIRETCKLIEYDLKLAGKGKLWVEVYRDDKYEYRALFPDVADWSQVPMTILTHPIHETQTDLS
Ga0211732_11956803F035768GGAGMKITVEDRLLAAYHAQKLRLRDREDEDYRARIEAKAFERIIVDRVQRNLRLGLDKGTNIDLEV
Ga0211732_11956805F081346AGGAMMSSMLQQIKMAKPDPNKPITHINPPTVVPDRVMPHKPGYNDTVVVPETEANPDKPKRTRRKPSK
Ga0211732_11956806F061859GGAMTFEALLIIVGFCLFACYLVFEWQKAAIPPYQEPVAPEPDLSEQWVKATKADTLDNIDNWNAKVGDKIWYKPDSGPLTESQVEQIKETAVIPQAVWPFPQGPKP
Ga0211732_11956808F039639GGAMNIDREFIKWFYEEAYPEQGSTRRQVYSTTQHSQNINIIDYWMREAFKAGAASQGYQVGDLAEQKAFDTQRNYQTERFIG
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