Scaffold Ga0211732_1147469

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1147469
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2328
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006935	Metagenome	361	Y
F017132	Metagenome	242	Y
F040624	Metagenome	161	N
F041601	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_11474692	F040624	GGA	MALYKRKKELQEQIIYWEKFQGVNWLGKWGRSVRLEVLKEKFAKIEKQITKSKNKKDENK
Ga0211732_11474694	F006935	N/A	MDKRYAKQIIEWAEDAKETLTIRKEIIIDESVTDEKLGNIIRMMYRAKVETQNETILKTKQNLEK
Ga0211732_11474696	F017132	N/A	MIRKMELGKFGDELYEIVKKIPMQRFSTELAGESAEALKRYYGVEKILKFPQTQEYLFVNLIEELQIQTNDNKETSESNQS
Ga0211732_11474698	F041601	N/A	MKQQILKLVNQIKENLKSIDKDGITHPLIDDVYEKLELIEDEIYEDDAQADALSFEDEDY