NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1121308

Scaffold Ga0211732_1121308


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1121308 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2937
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009604Metagenome / Metatranscriptome315Y
F023346Metagenome / Metatranscriptome210Y
F039627Metagenome / Metatranscriptome163N
F079812Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0211732_11213084F079812N/AMSTKYVMDGNNRNIGYTKDMGSVIYAHDKNGKDVGYYNVSNKTTFDSKGKRYGAGNLTNALVFEAVRKI
Ga0211732_11213086F039627N/AMTASFYKTVYQRKFNEMPRWKQLAIVEDSTRNNWSGLLTEFIKAVIEEAEKDYANSKSTISNPPNKYVSESDNKSKKISKKKN
Ga0211732_11213087F009604N/AMIECGCGNEIHPERYELGYKICLSCGDKSAKRSQKFGYLHFGHKTAGSIVITSKKAFDNYTKVSYRKGKASNMAYASRLSTSF
Ga0211732_11213088F023346N/AMKYTPNIVSKNIITTYARKIRNVQSEQIDPYIELIEQELIKVYPELKDREDNALNWAYDIINAESDVDVAETLNRVDTIITNERKSKWICDYCGKNTYNDDCEYLFGKNHMGCVLEEDIKNREHSDPDYILDARHRKITDIESKLNYYESELDKLQSELRRLSRDYPHEPTN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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