NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1076041

Scaffold Ga0211732_1076041


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1076041 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2951
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001280Metagenome / Metatranscriptome732Y
F006846Metagenome / Metatranscriptome363Y
F020166Metagenome / Metatranscriptome225Y
F028166Metagenome / Metatranscriptome192Y
F078716Metagenome / Metatranscriptome116N
F088905Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0211732_10760411F028166N/ALTGFNETKAGDTNSLDLNPTGQAPASAFPATDVSTQDGSGLGQNGK
Ga0211732_10760412F088905N/AMSDNTNDIDTTPVDAAPVVEVKEEPKAEVKSAPVADATTDYWATAWANRGV
Ga0211732_10760413F001280GAGGMCIECGCEAFGSETGIVPVTITDVSRDGESGLTLAMTSTPEQTRQFINE
Ga0211732_10760414F078716N/AMSENGTGTPTAPISEPSGALTSREVPRKYPKQGTRSGIKIDQNKHGIRRETSLDPKPPRKGRPKKV
Ga0211732_10760416F020166N/AMGKERLRMREPKIMKMDWRPLGYWPVYKDGKLTWEKDPDENVN
Ga0211732_10760417F006846AGGAMLIEFVEKYLMRPKRLRDAIEAVVHENDELLRILSEYKEEGPTNLTWAEGDTWYGWTYNTKLNRYFFDDIGNKSLMGLWEDQWAREAEAEAK
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