Scaffold Ga0211732_1029793

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1029793
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7447
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (12.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017129	Metagenome / Metatranscriptome	242	Y
F018001	Metagenome	237	Y
F042337	Metagenome	158	Y
F068458	Metagenome	124	Y
F085695	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_102979311	F042337	AGG	MELVIDGLDKLRHHTYHARKISNIRIDKKGVGRKASYVFAFPSIDGSIEGWNRELEVYLCKHPDGSGRYELFVMGLHGITCHYLELEEIKDMVVFQVHIISTMNKAKQYWLSV
Ga0211732_102979312	F017129	N/A	MSTTYNNYNDVQAYEALEEVRTATMLDPRYQQWVAELNISQSYVDPEGTIKAKYLNDQYSFSTSEPKSSILNFLKIKGIWS
Ga0211732_10297936	F068458	N/A	MLTIENYKKIKNQYFGDWQIGKILEEKSFYALQCFHKSGKRSITVVIFRDDTIDTEFNETAYKISLLEDSKGINDAIEDIIYKAVLEDMELFGEALVHYLNTL
Ga0211732_10297937	F085695	GAG	MRTNGQGKVIITSTPNGGNAFYDLYNMNKKLTIENFDKDLNMAIFYGWDVIAADETEDSYLFQVQNRSDNKLRVYITLGRELQYSELPYYPEMMYQCYIHDDEGHWSNRSWFRVHDITYKNFWELIEETITNHHLPF
Ga0211732_10297939	F018001	N/A	MLKIENIEKLKDTTLNDWKILDAGADTSFTKSRKNIYVLTFARMDNIGVMQDDRAGVIINRDISGLMSGYQIRVVYEHWDYELHTTYWRKENIMNKDAFFGMVLNKINEEYWKRNKR