NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211732_1022317

Scaffold Ga0211732_1022317


Overview

Basic Information
Taxon OID3300020141 Open in IMG/M
Scaffold IDGa0211732_1022317 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1907
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)10 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017988Metagenome / Metatranscriptome237Y
F020142Metagenome / Metatranscriptome225Y
F034178Metagenome / Metatranscriptome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0211732_10223172F017988N/AMKFLELTGFGNKHKHFISLRSISDIEFLPSYTTILLNNGHIVNVIETQKQITDIINYHQSEIVSVEYLDDLEAQIEAYEEMNADRFVTGKDMELPF
Ga0211732_10223174F034178N/AMVNLKVGDKVTSTKYPDRVFNLAWYQKGDSTCAIEDGHLRAVVKVSSLDLVTQE
Ga0211732_10223176F020142N/AMRRGPKQIEIPGKKWNEKFIHKNKTWHVVHKQDEITYAICELRNGVVGGIVERFYI

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