Scaffold Ga0194112_10661644

Overview

Basic Information

• Taxon OID: 3300020109
• Scaffold ID: Ga0194112_10661644
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015016 Mahale Deep Cast 400m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 703
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.1786
  • Long. (^o): 29.658
  • Depth (m): 400

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000744	Metagenome / Metatranscriptome	909	Y
F002243	Metagenome / Metatranscriptome	578	Y
F048268	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194112_106616441	F048268	N/A	SFTTMKLSDSSITKIADALKPAVINYIYEDPQFAEYMHDAVIEGIQSVMGDMDEDLLFEIGMLVFDRIELK
Ga0194112_106616442	F000744	GGA	MMTETTLKLNIHEIGVLLSALQLLDLSEEKIIAHEYGSVPALYNKLYTLYEQMDSSETGLRNDLVPSF
Ga0194112_106616443	F002243	GGAG	MPDFPTLQSKDGTMLVGFYPLQDSYGDISTEWCVQILSWKGVDQISKKYLNRVEKSLAIRERLAYDYVVTGDNQDLPQTGNPF