Scaffold Ga0194112_10404200

Overview

Basic Information

• Taxon OID: 3300020109
• Scaffold ID: Ga0194112_10404200
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015016 Mahale Deep Cast 400m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 987
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.1786
  • Long. (^o): 29.658
  • Depth (m): 400

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003543	Metagenome / Metatranscriptome	480	Y
F023361	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194112_104042001	F003543	AGGAG	MADETISTRIVANADFSALIADVHKVTASLSKLQEQLANSNKMMANQIAVMNRSFADTLRSTGQFSTHFVSLQSDVEKFGKNLDGGKLKLNQYFNAFREHARTSGGLIRDLAKQQVALQNSVLQPLGRNAQGLMQ
Ga0194112_104042003	F023361	N/A	MIAIKKTADSKTEDDTLNILIDACAIALEKQLPELVANREAFEDAIDVPTMNRILEVCGGIKLDDPNLVAAAVLAGQN