Scaffold Ga0194112_10368927

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0194112_10368927

Scaffold Ga0194112_10368927

Overview

Basic Information
Taxon OID	3300020109 Open in IMG/M
Scaffold ID	Ga0194112_10368927 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015016 Mahale Deep Cast 400m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1053
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location Name	Tanzania: Lake Tanganyika
Coordinates	Lat. (^o)	-6.1786	Long. (^o)	29.658	Alt. (m)		Depth (m)	400
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012342	Metagenome	281	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194112_103689272	F012342	AGGA	VVDERKGECQGRRDRCTLGDACPKFGTLGRAARDGRRRVKGCGDPVARGKRNRAKGDSKARRARRTLGIAGVNSRHEEHWGGAFRIEVKSGAQVSPVITRYKSARAQSDAARAIGDVRAFVLVCMGDNERSGLAIVELDVLGQLIALLRDTGHLD

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