Scaffold Ga0194112_10099788

Overview

Basic Information

• Taxon OID: 3300020109
• Scaffold ID: Ga0194112_10099788
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015016 Mahale Deep Cast 400m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2609
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.1786
  • Long. (^o): 29.658
  • Depth (m): 400

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002867	Metagenome / Metatranscriptome	524	Y
F006109	Metagenome	381	Y
F022403	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194112_100997882	F002867	N/A	MIDSTDYGDGYTLDRLENERGELYYRACKDSICRYAEDHCIAIMYLEGMGWEPKTPRHDN
Ga0194112_100997884	F006109	N/A	MTRYVVMAGDLWVTAIYGPGNGIGYTTSKEDASSWVTYERAVAAAKIVAQCTDRLVGVHSIEEPAFPRSWN
Ga0194112_100997885	F022403	AGGAG	MPLQHGSKIYCQLLLDSNRYKLAEKLAASEGKRVTGLLREMVYTALEKALPTSDYKAAEAADRAAWAESVQRRVQGRMRSKQEEKEAVQDA