NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194112_10006353

Scaffold Ga0194112_10006353


Overview

Basic Information
Taxon OID3300020109 Open in IMG/M
Scaffold IDGa0194112_10006353 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015016 Mahale Deep Cast 400m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15636
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (85.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.1786Long. (o)29.658Alt. (m)Depth (m)400
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002241Metagenome / Metatranscriptome579Y
F005585Metagenome / Metatranscriptome395Y
F013317Metagenome / Metatranscriptome272Y
F014613Metagenome / Metatranscriptome261Y
F031093Metagenome / Metatranscriptome183N

Sequences

Protein IDFamilyRBSSequence
Ga0194112_1000635310F002241GGAMRLWKGLTMSKPHSIKYIRQMMDWGFDEEFIARDAGINVESLMTRLRRANERERRNGNQGIESGTSSGESDS
Ga0194112_1000635328F031093GAGMEATSVAAFIASILGSIGLLIAGLRYIIKLENIPIVSRLDKMESQLELALARGVRN
Ga0194112_100063534F013317AGGALLIEKNKWDYLADIRARTGSKTLYINATPKGIYQFDLGAINEPEWLLKRLPITTDFGNKETNERLAGYLDIRLADLLLV
Ga0194112_100063536F014613GAGMLPNLSDEAIVGIIIGVPFIGLYLWGLFTSAKAKAFNEGYKRGRSSVRYTEIIK
Ga0194112_100063537F005585GAGGMATRGTIFYAFTKSRQPSVFSSETHLNWRLLLLRQSSQEWWKVQSARIRISISLDMPLSWLDADLLHQKIGTTLSLTRNHNKNQYCDYCKYRWGQNKGVWDIRATTPAVWKVQSETPLRKAQVRFYCQPCANEAQNWPDGTFYSLKEQLEDAINDFAGREKLDVELP
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