NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194113_10102754

Scaffold Ga0194113_10102754


Overview

Basic Information
Taxon OID3300020074 Open in IMG/M
Scaffold IDGa0194113_10102754 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2499
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.1786Long. (o)29.658Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012570Metagenome279Y
F019121Metagenome231Y
F041172Metagenome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0194113_101027542F012570GGAGGMQTVKIDGTTYRVKFDRDPLELAKLARKPWKPKKPKDIRKFPTWTPAVSTAEYIKRFDSLNFLQSVDYFGASAETSAQYDPTMPLFEVTQ
Ga0194113_101027543F041172GGAGGMGKLKNAMITARELAETSGTNEALLWQARESLQDAIDNSEADEGLASAERALALLNTYLMEVELCKR
Ga0194113_101027544F019121AGGCGGMYTLKRSINGLSLDDIKRIYDQNPNMTLRELSNLTGYAIPFLKKLLMEG

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