Scaffold Ga0194113_10085999

Overview

Basic Information

• Taxon OID: 3300020074
• Scaffold ID: Ga0194113_10085999
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2821
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.1786
  • Long. (^o): 29.658
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074373	Metagenome	119	Y
F074452	Metagenome / Metatranscriptome	119	N
F080943	Metagenome / Metatranscriptome	114	N
F083781	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194113_100859992	F083781	GGAGG	MSIRHINITKFEKEAKDLATKAHGNNPSFTGGSLYVEMRDKDHAELLRADLEQYSNASWGDGDKNSAYGTVVKAYKLGDQNGRTEFVYDFMPGPGATDSDLYHSKMGAMEQEIPPEVETMLEMEAEIARGK
Ga0194113_100859993	F080943	AGGAG	MITEATKERLRELEGQRITIEDELDHLQFTNNLARIVKLEHELDEIKDSIKKITASHTFEDISREELQRESRILQ
Ga0194113_100859994	F074452	N/A	MTMTRLGIDPFTQEEIRETQRAQDYWEMSYIDESNRVRYRISRVLVEEEILDLLYCHGHITADQQAATINQARRTHDNRSN
Ga0194113_100859998	F074373	GGAGG	MPRKDIIDFEIGDNEETMQYFTDLAKKHKKQVLIQAEAMKKVDSIEKLDITEVHDIIKNAQEKAKDEEL