Scaffold Ga0194113_10067684

Overview

Basic Information

• Taxon OID: 3300020074
• Scaffold ID: Ga0194113_10067684
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3315
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.1786
  • Long. (^o): 29.658
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004208	Metagenome / Metatranscriptome	448	Y
F009071	Metagenome / Metatranscriptome	323	Y
F020144	Metagenome / Metatranscriptome	225	Y
F039496	Metagenome	163	Y
F102116	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194113_1006768410	F009071	GGAG	MPFFPDCYDEWGLYQITYDGDHKMYEMLFEGTEEECRQYAYDNYTDKEQTNMCLMDWEAREWDV
Ga0194113_100676844	F004208	GGAGG	MTYKLDPEAKAFSYTREELFECIKKIVAHPHTAITKHDQSRALAIMMVFDDYFTNYTESDNNGGHYVYEQDAIDFISFVRFKLGIAGLPDGIDVDEVLK
Ga0194113_100676845	F039496	GGAG	MTDISKLSYKELQKLAKQIDERKEVLRKSKDCVEGYKITFCVKFNPAEHQFDELKSPEDFGDYLANDVANMIIKDLGLLQSDVSAFIIEEMTDEDKVEWKNFWEDDE
Ga0194113_100676846	F020144	N/A	MSNFYTLLPGTDVLRSKIDVFTWTNPENENETERVELTVDNAGIFITSCSGGAREDMSISQKDLAIALARGILEAYGVG
Ga0194113_100676849	F102116	GGAG	MTNIINKLLAIFNLKLVSTKPDTSLAKETVKFLERHKDYWNGDVFFPSYVGDINYVQEWVEGEFPQVSGGIYICERVLGTEDKYYDYNGDTYTAEQLQEKLK