Basic Information | |
---|---|
Taxon OID | 3300020074 Open in IMG/M |
Scaffold ID | Ga0194113_10048744 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 4135 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (33.33%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Tanzania: Lake Tanganyika | |||||||
Coordinates | Lat. (o) | -6.1786 | Long. (o) | 29.658 | Alt. (m) | Depth (m) | 200 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F032652 | Metagenome | 179 | N |
F033013 | Metagenome / Metatranscriptome | 178 | Y |
F038240 | Metagenome / Metatranscriptome | 166 | Y |
F056612 | Metagenome / Metatranscriptome | 137 | N |
F079978 | Metagenome | 115 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0194113_100487443 | F032652 | AGGAG | MAIVYLQQSLIDQCKLCAQQRDYNRRNSFDYSSDRTDDKSIWSFMGVLGEVALLTYFELDIDWEYLSTDKGFCGVDVGDIWEVRAMSKFGNRLFLWSDEVTKSSKLAYAWSKVVVDPQSGQCNICGWAMGYEIAMHGTHAQYDCKRSSYFIENNLLRQHRDPKQDKVLATKYHLLYRGIDETNL |
Ga0194113_100487444 | F079978 | N/A | MKLYAPEFAGMYIWATADPKSSKPSYSPSKSTTAPPNAVHGHPLGRFDSDGCYWTFVPMTGNEDPNSPLSSRFAKHPLAEQEKAQAIKEKVWGSLNSFGSYKETDF |
Ga0194113_100487446 | F033013 | N/A | MAIQLTAKASSLKTVMLQLDPELYVRIKAAAKHHNIPAAVAMRQILEQGIEEVEANA |
Ga0194113_100487448 | F038240 | N/A | MATPAGNKMRVQVLLDPEALSMMEREVQLRYNTAHRVTVSSLANEIIKSHYAILEPQDD |
Ga0194113_100487449 | F056612 | N/A | MTDFQSAFDAKLTLFDVKEKKSEKAPDKTGSIEIELSEAMKLAEYLTAHPGEEGYGGKTVIKIPVSAWDQRAPSGTEYISGRVWARKPEPTVNDVPIF |
⦗Top⦘ |