NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194113_10048744

Scaffold Ga0194113_10048744


Overview

Basic Information
Taxon OID3300020074 Open in IMG/M
Scaffold IDGa0194113_10048744 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4135
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (33.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.1786Long. (o)29.658Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032652Metagenome179N
F033013Metagenome / Metatranscriptome178Y
F038240Metagenome / Metatranscriptome166Y
F056612Metagenome / Metatranscriptome137N
F079978Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0194113_100487443F032652AGGAGMAIVYLQQSLIDQCKLCAQQRDYNRRNSFDYSSDRTDDKSIWSFMGVLGEVALLTYFELDIDWEYLSTDKGFCGVDVGDIWEVRAMSKFGNRLFLWSDEVTKSSKLAYAWSKVVVDPQSGQCNICGWAMGYEIAMHGTHAQYDCKRSSYFIENNLLRQHRDPKQDKVLATKYHLLYRGIDETNL
Ga0194113_100487444F079978N/AMKLYAPEFAGMYIWATADPKSSKPSYSPSKSTTAPPNAVHGHPLGRFDSDGCYWTFVPMTGNEDPNSPLSSRFAKHPLAEQEKAQAIKEKVWGSLNSFGSYKETDF
Ga0194113_100487446F033013N/AMAIQLTAKASSLKTVMLQLDPELYVRIKAAAKHHNIPAAVAMRQILEQGIEEVEANA
Ga0194113_100487448F038240N/AMATPAGNKMRVQVLLDPEALSMMEREVQLRYNTAHRVTVSSLANEIIKSHYAILEPQDD
Ga0194113_100487449F056612N/AMTDFQSAFDAKLTLFDVKEKKSEKAPDKTGSIEIELSEAMKLAEYLTAHPGEEGYGGKTVIKIPVSAWDQRAPSGTEYISGRVWARKPEPTVNDVPIF
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