Scaffold Ga0194113_10036620

Overview

Basic Information

• Taxon OID: 3300020074
• Scaffold ID: Ga0194113_10036620
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4999
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.1786
  • Long. (^o): 29.658
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002985	Metagenome / Metatranscriptome	515	Y
F015201	Metagenome / Metatranscriptome	256	Y
F042290	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194113_100366203	F002985	N/A	VSYVIATWKNGVPYAITACNQTRQFLLVPLDSDVALNKIFSHPYRAGAQQILAWINSNNDELASQELSIQDEARFRK
Ga0194113_100366205	F042290	N/A	MELTYRGCKYDKEKQAKKDRDWWNLAHRPWLRLTYRNIGYRPHLIGGQVK
Ga0194113_100366206	F015201	GGAGG	MNKALIVYLVNQKKKEARKDIESKHAIKELKKQSTVTF