Scaffold Ga0194113_10019855

Overview

Basic Information

• Taxon OID: 3300020074
• Scaffold ID: Ga0194113_10019855
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7449
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (25.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.1786
  • Long. (^o): 29.658
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007859	Metagenome / Metatranscriptome	343	Y
F009135	Metagenome / Metatranscriptome	322	Y
F010081	Metagenome / Metatranscriptome	308	Y
F013524	Metagenome / Metatranscriptome	270	Y
F068752	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194113_1001985515	F010081	N/A	MKEQIDSIIKNHCLRMQKVDQTKSIPIIVKQLDTIIYEMYHELYGLRDIGANNQYLNSFTAVDKKGHCC
Ga0194113_1001985516	F007859	N/A	MKKYLTLLLLFTGCTSGMYLRYNYNKALQNLPQCSKIHAINNDYIAFSMVEQSTNEVYTNYYKAYYSMDGKITKITKN
Ga0194113_1001985519	F013524	AGG	LIKYFIEQMKTNNEVINSLREFTNNNCNNVLDAKLCEDIRYLCDEVERYGREVVKANNFMDEDHNTIQRYKNKLEKCQKKLSNYEPF
Ga0194113_1001985520	F009135	N/A	MITKSPSYYLQINLPPNFDDVDAEMIKKDLMAYIISRNQYGAMFGPKSSKKGITIDKVLYRTNED
Ga0194113_100198553	F068752	AGTAG	MAHLIKLNQLDLNHDNTRTYIPILFNLDRAISMEPSVSGKHTAIITAHNGAGIRVKETLDEILKLSRDDSGKNQLNG