Scaffold Ga0194113_10015082

Overview

Basic Information

• Taxon OID: 3300020074
• Scaffold ID: Ga0194113_10015082
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8849
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (29.41%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.1786
  • Long. (^o): 29.658
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048762	Metagenome / Metatranscriptome	147	N
F048983	Metagenome	147	N
F085122	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194113_1001508213	F085122	N/A	MDYDENDQIEYVDVRVTPESMDVHIHVLKNNGYSVQKKSYFFGTCLICFLAGMYLMGMIR
Ga0194113_1001508215	F048983	AGG	MIEVILKLRDRNIFKVGTIIETMIDKHHMGTPIQVKASMRIRELHSDHCIADEEYDYAAVVPFRKIMYYDIITIDGMRPQDLAAVYNLGPKTSRFQKEKRHK
Ga0194113_100150825	F048762	GGAG	MVIDIRRDYRSDKEIKTAQDEKDRMMQEFLARGGKVEKLAPGIAKGASSLNRSGKLQYNESDIKAQAQQKADHRFFNKEE