Scaffold Ga0194113_10012178

Overview

Basic Information

• Taxon OID: 3300020074
• Scaffold ID: Ga0194113_10012178
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10129
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.1786
  • Long. (^o): 29.658
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005346	Metagenome / Metatranscriptome	403	Y
F014007	Metagenome / Metatranscriptome	266	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194113_100121782	F014007	N/A	MQEILIPEIDENIPLPANAVEALPELSPEAEIEMRARTIKLISDLTGTPLCPDEEDIAVAKEIATAHLANPKNRVDYSKYPNETLAYLAGLVAQSNCMIVDDLSELKLYVVNKLVYEVEHADSSKTRIQALSKLGEVEGVDAFKKRSEVTHIIKPIEEVEKELLNVLEGIEYKVLDEPNRAENVANG
Ga0194113_100121786	F005346	GAGG	MAYSNALEYLDTKLKEERALIIETLIQGKLDEGEYKRLCGALQGLDLACNHIRDLAKRLEEE