Scaffold Ga0194113_10009096

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0194113_10009096

Scaffold Ga0194113_10009096

Overview

Basic Information
Taxon OID	3300020074 Open in IMG/M
Scaffold ID	Ga0194113_10009096 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	12058
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (72.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location Name	Tanzania: Lake Tanganyika
Coordinates	Lat. (^o)	-6.1786	Long. (^o)	29.658	Alt. (m)		Depth (m)	200
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001246	Metagenome / Metatranscriptome	737	Y
F065305	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194113_1000909611	F065305	GGA	MEIILWTCVEAQKLINNVRTSKMPNNIKAELIQIHIEHSPKTCKFTIDAKAD
Ga0194113_100090962	F001246	GAG	MSALVAWCLANQALIATVLFAVSEALGANPKVKSNGLLSLILLQVQGQLKARGGKDLTP

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