Scaffold Ga0194113_10000333

Overview

Basic Information

• Taxon OID: 3300020074
• Scaffold ID: Ga0194113_10000333
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 60188
• Total Scaffold Genes: 101
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (21.78%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.1786
  • Long. (^o): 29.658
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008080	Metagenome / Metatranscriptome	339	Y
F008356	Metagenome / Metatranscriptome	334	Y
F011298	Metagenome / Metatranscriptome	292	Y
F011485	Metagenome / Metatranscriptome	290	N
F024782	Metagenome / Metatranscriptome	204	Y
F025688	Metagenome / Metatranscriptome	200	Y
F035278	Metagenome / Metatranscriptome	172	Y
F041765	Metagenome / Metatranscriptome	159	Y
F053245	Metagenome / Metatranscriptome	141	Y
F063489	Metagenome / Metatranscriptome	129	Y
F090104	Metagenome	108	Y
F102699	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194113_1000033321	F024782	N/A	MIEKAIERLRVYNKWRTGEDDRTMDEVGIIPNQLTEDIKNICDELEKLICIYASRN
Ga0194113_1000033322	F102699	N/A	MNNSNFYLTLDLPKNFSRQDAEKIRDDVLDFLEDKRHYGSKHDGKNGITVKVVSVSTNHD
Ga0194113_1000033331	F008080	N/A	MLKIQVWMRGTNEYSRHTIPGPTPDQTQEEFEEAYRESGECFCEGDVWELCPYFNFEKRDSIDVYLGGDDNIKNNEKPVYVTSNWEDFEFVKGGGVNYIPQEPDEVGKVNIWWYHDMKFNAVYYWTNVSEFDPKKLQVQYGVDQDGNKYLEDLIYDGEHPDDFNDFGDSGYGYTGPEFVYHPDQKFAEPKED
Ga0194113_1000033338	F011298	N/A	MAHFLKLHVLDPGHDEISNTINRHYNFQLINLDMVVNIEQSHIHSLIFTKNNATHPIRVKESLDDILKLVSK
Ga0194113_1000033339	F063489	N/A	MNKRYIVRDKDGTYQSAYNLALGKKKAYDWAMQCAKSVNGVIYYSEGEKEEEVFRTPENRRS
Ga0194113_1000033344	F025688	N/A	MKYTLNVDGTNNGGKFLENYIGQEVNIESLYKNIEVNSPPLAILKTNDGNQHSIQLIDVRFIGEYIYIHCFAIQHDNEHGGKALLRLKPVCDLEKIINP
Ga0194113_1000033345	F053245	N/A	MKHVTINIGDDDLKDIAEIFDKEADFKPQARQDHLIIGILRQVLNNPKTEIIDTIDL
Ga0194113_1000033348	F041765	N/A	MINHKKILEDSADFFNKEVDKVITNISTAKNAKQRNKYLKQIFALKNRLQLEVKMLDDHSNF
Ga0194113_1000033351	F008356	N/A	MNISEFERSKPINTFRKINELKKLIQEEQIKTENLYSNRIATLDSMLKAVNELMDTFKKG
Ga0194113_1000033353	F011485	N/A	MINHIKKYIVSILTSVAVFAADNEVPITANVSAGYNNHYIINGLAKTEGQGFGSFNIGTSYFGADVYLGGIVLPDSNGLDESHWNVGVGKSIQILEKCSLRVDLQGLRHQSAIPGGRNSIEIAPKIALVNPYITPFLRGSHDFNLKQSGYIAGFERPTDVFGWFSLNPSIEYGKFTDYEVVAAKIGVSRTFFNHLTPYVEVGWYDNNFSPSKYNIATREFSGDIVTVAGMRWSF
Ga0194113_1000033358	F090104	GGA	MHEVDNIINNLIRSIKLVDSNKSIPYLVKDIDKHVQEAYSQLYKYREQNSVYKPLNGNKRGHCC
Ga0194113_1000033362	F035278	GGA	MNSKHIKKIIDKQFKIAKLDLRYEDVCENQIPNWYKEHAYSEEENEKWKNWTINYLRDKMKLTKDKATIETAWLDLNYGLRTISNQPKKKNRR