Scaffold Ga0206356_11714207

Overview

Basic Information

• Taxon OID: 3300020070
• Scaffold ID: Ga0206356_11714207
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1224
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003700	Metagenome / Metatranscriptome	473	Y
F074515	Metagenome / Metatranscriptome	119	Y
F076323	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206356_117142071	F076323	N/A	QVANGAAAAAPVWGRSLERVLTAFDTEATRLQELRTKLQELGGEMAARERRVQELETELQRIRVERLRDQEAVDRLKHELADRNSRLERALSKTQELVAIIQGGHLR
Ga0206356_117142072	F074515	GGAG	VAAYLVVGGLPGLLYAAGICMATFVGAFAIHTGRTEAVSGPEPETAAPRRPRWRRKKHIIAELEAELAATVFELEEHRRALANLATQLSREAAAAHRNAEQLGQRIHELETERDGLLELVATERERFEQTLDQLGGGLGRHGNELAELERELEALIAR
Ga0206356_117142073	F003700	GGAG	MLLKILIVGALAIGLMAAIRDGRILRHAGLLSTCSPAVVGGRQDPTLQSCSKGRLDGFPDLTNKSCALVSARPNRQLWRCEAPVVSSQRPTG