Scaffold Ga0206356_10108062

Overview

Basic Information

• Taxon OID: 3300020070
• Scaffold ID: Ga0206356_10108062
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1435
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043012	Metagenome / Metatranscriptome	157	Y
F049137	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206356_101080623	F049137	GGAGG	VRAGEALGIVARPAMSGTMRARRTKKERHRVTAKQWLGYVAVAVLTTWLTQKLDDLVDGRFGARDGQNL
Ga0206356_101080624	F043012	AGGAGG	MKVRLILGAALAAALALGVTSAGFSAGHHRTPTITGMVGGDFDTQLPPGGQNGADWGVDASFPRAASNVIHDGDVKVVGPGSGDQGEGFRCLGSATNPLAPKGKVCIYLLNSGTAANIRGVTPAPGTHGSRFGFKLIWDATGNGDTFVDAVWAYHFS