Scaffold Ga0193717_1025154

Overview

Basic Information

• Taxon OID: 3300020060
• Scaffold ID: Ga0193717_1025154
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2432
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9365
  • Long. (^o): -106.9428
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024220	Metagenome / Metatranscriptome	207	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193717_10251544	F024220	GGAGG	MMRISVLMLMLAGGSAMAAEPRELVTAPDAVLCLSADSLDAAGTGRVARSQDRLRGLGCLRSPAGVPATLLSGSEGVGIWSVRFRPLGMSGGITLWGRPSAFTLPDGTPLPTVKAEK