Scaffold Ga0193745_1017583

Overview

Basic Information

• Taxon OID: 3300020059
• Scaffold ID: Ga0193745_1017583
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1a2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1553
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8927
  • Long. (^o): -106.9112
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039818	Metagenome	163	Y
F085503	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193745_10175832	F039818	N/A	MARQFKLIVLMGVAAFIVCGVAVFYTHRTAHGTTAEEQAAYESGEKAGKEAPRGATLPTEAGLNMTAQKYFEQQGPAEQLQNPSRAAALHAFKQAFEKGYTTGFKKTHPQK
Ga0193745_10175833	F085503	GGAG	MTKSVQTLTQSGLLAVLLQRQRHKVFQLARQSAHRKRVHTAFWNTLTRARLAFAAPKPIDGGALHLNRSPGSVP