Scaffold Ga0181555_1000495

Overview

Basic Information

• Taxon OID: 3300020051
• Scaffold ID: Ga0181555_1000495
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011504AT metaG (spades assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38786
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (22.41%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014006	Metagenome / Metatranscriptome	266	N
F027498	Metagenome / Metatranscriptome	194	N
F101072	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181555_10004953	F014006	GAGG	MDVHDFLKSRYEVFYELLKNECKTKGWNISFDKTKLFHDIANIDGHRGEGLSQYPKVNGEEIIMDEGWRLIFDYGYANDHGDDTIDLSFKGTFYNPNNVEYPFTYKATYFWNNALSEMEHEEEVFDYSKGVPSDITEQFIEIMHEKARWGV
Ga0181555_100049545	F101072	N/A	MKMPKLSQQAMIVAAAAVLPVLASAYKLRVLDAAVLALSGALAVYNVNCLTAGSCNTWATVVSISFFIMTIMQLMAPREGMEGEEEDVLITDEEEVTEMPADVADMSMTEPAPTQSKMPAETKQGMTKAAPILTDEEFELLKAQLME
Ga0181555_100049558	F027498	N/A	IFNQGQTTMPAKGDIKPVENSTDYLEFNGKRWHRFHESGKDAGVGVWGETDEVGSPATRWFLRPRARRS