Scaffold Ga0207193_1151741

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1151741
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1942
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022373	Metagenome	214	Y
F046865	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_11517413	F046865	GAGG	MIIKQLDPVSNQIRNNTLEEVAKEFDAMKNGGDTSASFAAYVRSMKK
Ga0207193_11517415	F022373	GGAG	MQTKAILEFTYPEDEDKLLFAIKGPEMYKALTNIKMAVTGSFNTKADLNAVLDRVQDLTDQIFEELGE