NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207193_1086720

Scaffold Ga0207193_1086720


Overview

Basic Information
Taxon OID3300020048 Open in IMG/M
Scaffold IDGa0207193_1086720 Open in IMG/M
Source Dataset NameMicrobial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2942
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location NameLake Manganika, Minnesota, USA
CoordinatesLat. (o)47.489552Long. (o)-92.573009Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001561Metagenome / Metatranscriptome670Y
F078705Metagenome116N
F093349Metagenome106N
F093847Metagenome106N
F095470Metagenome105N
F103253Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0207193_10867203F095470GGAMKKVIWVASESENWHLYRHFEPIIEDVTGFNFKEDLCSETVKYMAKRFSETPYQRRFRSIFSIYQDDYKALVEKFIKQAENNAKIEVK
Ga0207193_10867204F093349GAGMSTVVKYIFKRYTSGMEIFEALLLMADIKKSAHNKNHSLENFTVDSQVKFSSKCKICKKTVTVDLEAELPVSGEVLFIDCQKPERKKKIQISS
Ga0207193_10867206F001561N/AMKRKQKMQTREQKIKLLKKTIETLWHGVSDTKEGDYPRIISLYKEVLMHDYHDADSWENMVWLMWSMAINKKDTVWLFQAEKFAKRYLSLNPNGYRAYEYVGQFYRIMMVDERLAIRYYESALRWKDAPETTFHSLTSLYIKNGDKIRAIGNCRFNLKRFPNDPYAQSKLKELTK
Ga0207193_10867207F103253N/AMEEKVWIYLSKTGTGFELKGADIISAFDAFINADGSYLIEHSYSDIKGDEHFFIYEWDKSQKKRRTIFEGYQRQNILTGFAKNVDIPENLKLAIFKNYTFDEEETENANS
Ga0207193_10867208F078705N/AMYIAVDAIASEDDPKLSYLLFPYDEDLLEAIEENLKEIRVEDEIIFSLDDVLLIRGEFHYVRKKVTMTDISEHRFSLGHNTESIPILENSKLHVANDYFYFSGYRKGTKNDKSNLKYVSGNFNLITIEKLRKYVKSKRDMVK
Ga0207193_10867209F093847N/AQSQKDSTLTINLRKTFARVVYYIEQTNQGKSKETILKELDLSEDEFQFLLNTMLSFSALKDNEATISSFDIIGTVYIGGIYLTAHNKDLISL

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