Basic Information | |
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Taxon OID | 3300020048 Open in IMG/M |
Scaffold ID | Ga0207193_1086720 Open in IMG/M |
Source Dataset Name | Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Minnesota - Twin Cities |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2942 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (44.44%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Manganika, Minnesota, USA | |||||||
Coordinates | Lat. (o) | 47.489552 | Long. (o) | -92.573009 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F001561 | Metagenome / Metatranscriptome | 670 | Y |
F078705 | Metagenome | 116 | N |
F093349 | Metagenome | 106 | N |
F093847 | Metagenome | 106 | N |
F095470 | Metagenome | 105 | N |
F103253 | Metagenome | 101 | N |
Protein ID | Family | RBS | Sequence |
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Ga0207193_10867203 | F095470 | GGA | MKKVIWVASESENWHLYRHFEPIIEDVTGFNFKEDLCSETVKYMAKRFSETPYQRRFRSIFSIYQDDYKALVEKFIKQAENNAKIEVK |
Ga0207193_10867204 | F093349 | GAG | MSTVVKYIFKRYTSGMEIFEALLLMADIKKSAHNKNHSLENFTVDSQVKFSSKCKICKKTVTVDLEAELPVSGEVLFIDCQKPERKKKIQISS |
Ga0207193_10867206 | F001561 | N/A | MKRKQKMQTREQKIKLLKKTIETLWHGVSDTKEGDYPRIISLYKEVLMHDYHDADSWENMVWLMWSMAINKKDTVWLFQAEKFAKRYLSLNPNGYRAYEYVGQFYRIMMVDERLAIRYYESALRWKDAPETTFHSLTSLYIKNGDKIRAIGNCRFNLKRFPNDPYAQSKLKELTK |
Ga0207193_10867207 | F103253 | N/A | MEEKVWIYLSKTGTGFELKGADIISAFDAFINADGSYLIEHSYSDIKGDEHFFIYEWDKSQKKRRTIFEGYQRQNILTGFAKNVDIPENLKLAIFKNYTFDEEETENANS |
Ga0207193_10867208 | F078705 | N/A | MYIAVDAIASEDDPKLSYLLFPYDEDLLEAIEENLKEIRVEDEIIFSLDDVLLIRGEFHYVRKKVTMTDISEHRFSLGHNTESIPILENSKLHVANDYFYFSGYRKGTKNDKSNLKYVSGNFNLITIEKLRKYVKSKRDMVK |
Ga0207193_10867209 | F093847 | N/A | QSQKDSTLTINLRKTFARVVYYIEQTNQGKSKETILKELDLSEDEFQFLLNTMLSFSALKDNEATISSFDIIGTVYIGGIYLTAHNKDLISL |
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