Scaffold Ga0207193_1035772

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1035772
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5580
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000369	Metagenome / Metatranscriptome	1222	Y
F025747	Metagenome / Metatranscriptome	200	Y
F033808	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_103577213	F025747	AGGAGG	VPDLNEFLYSEKVYPPELERLGGKKPCSKCDKDSEEYFWDAMSLTMSWECPDGHKNSFKV
Ga0207193_10357722	F000369	GAG	MSEIELADHFDRMNVVVSELLKGSNPTQIATITGFKRAEVVELIDEWKSVVHNDTAARERAKEAISGADQHYAMLIKEAWKTVEDADQAGQLSVKSGALKLIADIEGKRIGMLQEIGLLDNAELATQIADTERKQDILVKILKEVTATCPKCKMEVAKRLSQITGIVEPIEIVEEVSGP
Ga0207193_10357729	F033808	GAGG	MEMFLLGMMLGFIIGYPVGLFIDKLDKRERAKNGR